Hi Scott,
We don't recommend Flashing things to KFLOP in cases like this. Its usually better to add this to the end of your Initialization Program so it automatically runs forever after the system is initialized.
But if you decided to Flash it, you would need to compile and download it to KFLOP, then set "Launch on Power Up", then Flash User Memory.
To remove all User Programs and set KFLO to a default Configuration re-Flash "New Version"
Regards
TK